Holm Oak (Quercus ilex) Transcriptome. De novo Sequencing and Assembly Analysis
نویسندگان
چکیده
منابع مشابه
Clustering of Short Read Sequences for de novo Transcriptome Assembly
Given the importance of transcriptome analysis in various biological studies and considering thevast amount of whole transcriptome sequencing data, it seems necessary to develop analgorithm to assemble transcriptome data. In this study we propose an algorithm fortranscriptome assembly in the absence of a reference genome. First, the contiguous sequencesare generated using de Bruijn graph with d...
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Holm oak is a dominant tree in the western Mediterranean region. Despite being well adapted to dry hot climate, drought is the main cause of mortality post-transplanting in reforestation programs. An active response to drought is critical for tree establishment and survival. Applying a gel-based proteomic approach, dynamic changes in root proteins of drought treated Quercus ilex subsp. Ballota ...
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One of the characteristics of holm-oak acorn production is its high variability among individuals and years. To examine the main causes of this fact, a study was conducted from 1998-2010 in a natural area of holm-oak in southern Spain, where floral phenology, fruit production, fruit size, airborne pollen emission and meteorology factors were analyzed with the ultimate aim of developing a model ...
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Reforestation with autochthonous species should take into account the preservation of the variability and the geographical structure of genetic diversity in forest species. In order to provide empirical data, genetic composition of an artificial population of holm oak (Quercus ilex L.) and its natural seed-origin population in Andalusia were analysed with six microsatellite loci. The genetic di...
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